Linkage Group II

This table contains molecular mapping data from the Silflow-Lefebvre laboratory at the University of Minnesota.
Asterisks denote BAC clones at the end of a contig.

LG MAPPED MARKER ACCESSION # v2.0 SCAFFOLD v3.0 SCAFFOLD CONTIG SIZE OVERLAP WITH SCREENED BY BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC
II KLP1 X78589 5 7 71 kb Silflow/Lefebvre 11d16 12o10 13h12 23k1* 30d8 4c18
II PKA AV390434 5 7 129 kb GP36 contig (106kb) Silflow/Lefebvre 13k12* 15c10 1b3 23o14 24b20 26o19 2o21
II GP36 AY398640 5 7 106 kb GP15 contig (126kb) Silflow/Lefebvre 11g15 13k12* 15i16* 19p16 20b10 22i13 26i19 2a19 37f10 37n5 4c1
II GP15 AY398638 5 7 126 kb GP36 contig (106kb) Silflow/Lefebvre 11g15 15b14 15i16 19p16 1h16 2a19* 2l8* 31o1 31p3 4c1
II EST 925007A05 BE441583 5 7 67 kb GP15 contig (126kb) Silflow/Lefebvre 11g15 15b14 15i16 15m2 18p3 1c5 1h16 2a19 2l8 31o1 31p3 32k19 4c1 4f24
II CNC17 BI724441 5 7 119 kb CNC17 contig (119kb) Silflow/Lefebvre 10c15 11n11* 13n18 15k16 15m19 1k8 23e19* 24g23 25f11 25h11 2b2 39e3
II GP130 5 7 CNC17 contig (119kb) Silflow/Lefebvre 10c15 11n11 13n18 15k16 15m19 1k8 23e19 24g23 25f11 25h11 2b2 39e3
II S641 BM001145 39 7 133 kb OPSINB Silflow/Lefebvre 17i7 17m12* 19f24* 25h6 32b14 40c12
II OPSINB AF508968 39 7 CPX1 contig (134kb) Silflow/Lefebvre 17m1 17m12 26L17
II CPX1 AF133671 39 7 134 kb CPX1 contig (134kb) Silflow/Lefebvre 17l20* 17m1*
II DIC8 39 70 kb Silflow/Lefebvre 14p18 16d3 31f14 39e2 39p4
II GP226 39 7 116 kb GP226 contig (116kb) Silflow/Lefebvre 12g20 14h21 14j22 17g6 23b14 28g7 35g14 37p23 38f2 4n10*
II RB60 AF036939 39 7 GP226 contig (116kb) Silflow/Lefebvre 12g20 14h21 14j22 17g6 23b14 28g7 35g14 37p23 38f2 4n10*
II ALAD U19876 68 7 82 kb Silflow/Lefebvre 16j16* 38g24
II S6175 68 157 kb S6175 contig (157kb) Silflow/Lefebvre 17k3 24g19 27p11*
II NDK BE725926 68 7 S6175 contig (157kb) Silflow/Lefebvre 17k3 24g19 27p11
II LC1 AF112476 68 7 S6175 contig (157kb) Silflow/Lefebvre 40f6*
II S6135 BQ824598 68 7 107 kb BAC 12i20 end Silflow/Lefebvre 12i20* 12k17 17a2 1c22 1g22 26d8 27l17 2d2 33c22* 37f13 39f9 39g6
II BAC 12i20 end PTQ4397.x1 68 7 94 kb S6135 Silflow/Lefebvre 12i20* 12o21* 23g3 23p2 2b24 32d4 3h21
II CIA5 AF317732 206 5 111 kb Silflow/Lefebvre 17f20* 25h15* 4k7
II CNB8 BG848462 61 5 78 kb Silflow/Lefebvre 19p9* 22p15*
II CNA72 127 kb CNA72 contig (127kb) Silflow/Lefebvre 15e21 23a18 28g9 28h13 33o4 34g10 40l22 40n22 6g20*
II BAC 36m9 end PTQ13479.y1 2 5 CNA72 contig (127kb) Silflow/Lefebvre 12g2 36m9 3h8 5a19
II BAC28n4-3.8kb end fragment GP366 contig (737kb) Nguyen 12g19 15k2 18k8 23k3 23l8 28k5 28n4* 32l16 3l4 40h5
II GSP1 AF108140 2 5 GP366 contig (737kb) Nguyen 10m11 17d15 28n4* 31l9 37g21 3b19 3l4
II BAC3b19-3.5 kb T7 end fragment GP366 contig (737kb) Nguyen 21b14 24a18 34f11 3b19
II BAC3b19-20kb end fragment GP366 contig (737kb) Nguyen 21b14 24a18 3b19
II BAC34f11-5kb end fragment GP366 contig (737kb) Nguyen 13m9 21b14 34f11 3b19
II BAC20o1-2.7kb-end fragment GP366 contig (737kb) Nguyen 11k20 19f12 20o1 23l2 27p21 34f11 34m20 38n14
II BAC9l10-4.5kb end fragment GP366 contig (737kb) Nguyen 10g20 20o1 33k1
II BAC3j20-9.2kb-T7 end fragment GP366 contig (737kb) Nguyen 10g20 21o12 27p21 31i6 33g8 33k1 3j20
II DHC4 U61367 2 5 GP366 contig (737kb) Nguyen 14k4 19e16 20b12 22i24 26o24 29p5 39c11 3j20 40k9 5l20
II DHC5 U61368 2 5 GP366 contig (737kb) Nguyen 11n10 14a13 14k4 1l10 20b12 22m22 26o24 3o5
II BAC22m22-5kb end fragment GP366 contig (737kb) Nguyen 14f1 20a15 22c14 22m22 24j6 24l16 39c12 4o7
II BAC4o7-2kb T7 end fragment GP366 contig (737kb) Nguyen 10l18 11j2 24g8 39h12 4o7
II BAC24g8-3.7kb T7 end fragment GP366 contig (737kb) Nguyen 11j2 19h7 24g8 29e17 37g18
II GP225 AY220531 2 5 GP366 contig (737kb) Nguyen 10l18 11j2 24g8 39c12 39h12 4o7
II BAC11j2-3.8kb end fragment GP366 contig (737kb) Nguyen 11j2 16m18 29e17
II BAC3n20-1.9kb end fragment GP366 contig (737kb) Nguyen 12i18 13j1 19b18 19i9 19n1 20o10 2e22 3n20 3p17 32f9 34k10 38m9 38m13 40c13
II BAC8f3-6.2kb T7 end fragment GP366 contig (737kb) Nguyen 20o10 38j17 40c13 5i14
II BAC38j17-2.8kb T7 end fragment GP366 contig (737kb) Nguyen 1o17 20b20 23p12 24n11 37c14 38j17 39n3 4p24
II BAC39m2-4.9kb end fragment GP366 contig (737kb) Nguyen 1o17 23p12 24n11 39m2
II GP366 AY220530 2 5 737 kb GP366 contig (737kb) Nguyen 1d19* 34i12 39m2 6h14
II ZYMC16 104 kb EST 925017A02 Silflow/Lefebvre 10b11 17a1 1n23 22o2* 28g22 2h4 2p16*
II EST 925017A02 BE442289 2 5 96 kb ZYMC16 contig Silflow/Lefebvre 16e24 16h4* 17i2 19l14 22o2* 26e21 26l3 3o17 35l17 37k1
II CNA45 BI724982 66 79 64 kb Silflow/Lefebvre 14c2 24g20 34a19 34b21* 38l12
II RBCS2 X04472 66 79 50 kb Silflow/Lefebvre 29e11
II GAS18 108 kb Silflow/Lefebvre 21h7* 23c18 24e11 24l17* 2b4 30a14 33m5 34c10
II YPTC4 U13167 8 24 110 kb YPTC4 contig (110kb) Silflow/Lefebvre 13j22 14k22 18j17* 20a8
II S321 BU650605 8 24 YPTC4 contig (110kb) Silflow/Lefebvre 13j22 18j17* 37g3*
II GP383 55 24 62 kb Silflow/Lefebvre 14g14 19c15 32i10* 33p15*
II CNA43 121 24 113 kb Silflow/Lefebvre 28c14
 

Additional BAC hybridizations for this linkage group are shown on the next page


Last updated on June 12, 2006
By Nancy Haas nancy-h@cbs.umn.edu

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